PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC31_p9
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WOX
Protein Properties Length: 294aa    MW: 33337.5 Da    PI: 7.807
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC31_p9genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.7e-193292357
              --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
  Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
              +R+t+t++q+++L++l+++   r p+a+++++++++l    +++ ++V++WFqN++a+e++
  RrC31_p9 32 TRWTPTTDQIRILKDLYYNngVRSPTADQIQKISASLrqygKIEGKNVFYWFQNHKARERQ 92
              8*****************8678*************************************97 PP

2Wus_type_Homeobox113.79.4e-373094265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++tRWtPt++Qi+iL++ly+ +G+r+P++++iq+i+a+L++yGkie+kNVfyWFQN+kaRerqk+
           RrC31_p9 30 TSTRWTPTTDQIRILKDLYYnNGVRSPTADQIQKISASLRQYGKIEGKNVFYWFQNHKARERQKK 94
                       789***************9779*****************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.4E-8892IPR009057Homeodomain-like
SuperFamilySSF466892.4E-111894IPR009057Homeodomain-like
PROSITE profilePS5007110.2682793IPR001356Homeobox domain
SMARTSM003896.0E-62997IPR001356Homeobox domain
CDDcd000861.54E-73294No hitNo description
PfamPF000461.0E-163292IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEPPQHYHQA DQESGNNNKS VSGGYTCRQT STRWTPTTDQ IRILKDLYYN NGVRSPTADQ  60
IQKISASLRQ YGKIEGKNVF YWFQNHKARE RQKKRFNRTT MATPTSSSPN SVMMMASDHY  120
HHNHHHHGVT IQKPALVNVK LDQENHMFHQ NRSYPSFNNG SIHHASSGTE YGVFGASNAY  180
ISNHIYGSME QDCSMSYNSV GGGWTNMDHN HHYSTPAYNF FDRPSPLSGL EGHQEEGEYG  240
GDVYLEHRRT LPLFPSHGED HINGGGGSIL KYGQSDGCHR YDRDPCASLK LCLN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324670.0AC232467.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB024N11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627198.10.0PREDICTED: protein WUSCHEL-like
RefseqXP_013681940.10.0PREDICTED: protein WUSCHEL-like
SwissprotQ9SB921e-140WUS_ARATH; Protein WUSCHEL
TrEMBLA0A0D3BEE00.0A0A0D3BEE0_BRAOL; Uncharacterized protein
STRINGBra024485.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52442847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-141WOX family protein